63 Identifying patients with rapid progression from hormone-sensitive to castration-resistant prostate cancer: a retrospective study Chenxi Pan#, Yi He#, He Wang#, Yang Yu#, Lu Li, Lingling Huang, Mengge Lyu, Weigang Ge, Bo Yang, Yaoting Sun, Tiannan Guo, Zhiyu Liu* Mol Cell Proteomics. 19 June 2023. doi.org/10.1016/j.mcpro.2023.100613
62 Proteome Landscapes of Human Hepatocellular Carcinoma and Intrahepatic Cholangiocarcinoma Xiao Yi# , Jiang Zhu#, Wei Liu, Li Peng, Cong Lu, Ping Sun, Lingling Huang, Xiu Nie, Shiang Huang, Tiannan Guo* , Yi Zhu* Mol Cell Proteomics. 20 June 2023. doi.org/10.1016/j.mcpro.2023.100604
61 Proteomics approaches to long COVID: status and outlooks Xiao Liang*, Yingrui Wang, Tiannan Guo Life Medicine, 19 June 2023. doi.org/10.1093/lifemedi/lnad023
60 Proteomic Dynamics of Breast Cancer Cell Lines Identifies Potential Therapeutic Protein Targets Rui Sun#, Weigang Ge#, Yi Zhu#, Azin Sayad#, Augustin Luna, Mengge Lyu, Shuang Liang, Luis Tobalina, Vinodh N. Rajapakse, Chenhuan Yu, Huanhuan Zhang, Jie Fang, Fang Wu, Hui Xie, Julio Saez-Rodriguez, Huazhong Ying, William C. Reinhold, Chris Sander, Yves Pommier, Benjamin G. Neel*, Ruedi Aebersold*, Tiannan Guo* Mol Cell Proteomics. 19 June 2023. doi.org/10.1016/j.mcpro.2023.100602
59 Mass Spectrometry-based Proteomics of Epithelial Ovarian Cancers: a Clinical Perspective Liujia Qian, Rui Sun, Zhangzhi Xue, Tiannan Guo* Mol Cell Proteomics. May 18 2023. doi: 10.1016/j.mcpro.2023.100578.
58 Multi-omics blood atlas reveals unique features of immune and platelet responses to SARS-CoV-2 Omicron breakthrough infection Hong Wang#*, Cuicui Liu#, Xiaowei Xie#, Mingming Niu#, Yingrui Wang#, Xuelian Cheng#, Biao Zhang#, Dong Zhang, Mengyao Liu, Rui Sun, Yezi Ma, Shihui Ma, Huijun Wang, Guoqing Zhu, Yang Lu, Baiming Huang, Pei Su, Xiaoyuan Chen, Jingjing Zhao, Hongtao Wang, Long Shen, Lixia Fu, Qianqian Huang, Yang Yang, He Wang, Chunlong Wu, Weigang Ge, Chen Chen, Qianyu Huo, Qingping Wang, Ying Wang, Li Geng, Yan Xie, Yi Xie, Lijun Liu, Jianwei Qi, Huaiyong Chen, Junping Wu, Erlie Jiang, Wentiao Jiang, Ximo Wang*, Zhongyang Shen*, Tiannan Guo*, Jiaxi Zhou*, Ping Zhu*, Tao Cheng* Immunity. 2023. 56(6): 1410-1428.e8.
57 USP7 represses lineage differentiation genes in mouse embryonic stem cells by both catalytic and noncatalytic activities Chao Liu#, Lingang Sun#, Yijun Tan, Qi Wang, Tao Luo, Chenlu Li, Nan Yao, Yuting Xie, Xiao Yi, Yi Zhu, Tiannan Guo, Junfeng Ji* Science Advances. 2023. 9(20): eade3888.
56 The Short-Term Variation of Human Gut Mycobiome in Response to Dietary Intervention of Different Macronutrient Distributions Yunyi Tian, Wanglong Gou, Yue Ma , Menglei Shuai, Xinxiu Liang, Yuanqing Fu*, and Ju-Sheng Zheng* Nutrients. 2023 Apr 29;15(9):2152. doi: 10.3390/nu15092152.
55 An immunometabolism subtyping system identifies S100A9+ macrophage as an immune therapeutic target in colorectal cancer based on multiomics analysis Xuanwen Bao#*, Danyang Wang#, Xiaomeng Dai#, Chuan Liu#, Hangyu Zhang, Yuzhi Jin, Zhou Tong, Bin Li, Chuchu Tong, Shan Xin, Xin Li, Yanfang Wang, Lulu Liu, Xudong Zhu, Qihan Fu, Yi Zheng, Jingwen Deng, Weihong Tian, Tiannan Guo, Peng Zhao, Wenbin Chen*, and Weijia Fang* Cell Reports Medicine. 2023. 4(4): 100987.
54 FOSL2 promotes intertumoral infiltration of T cells and increases pathological complete response rates in locally advanced rectal cancer patients Kailun Xu#, Xiaoyang Yin#, Biting Zhou, Xi Zheng, Hao Wang, Jing Chen, Xue Cai, Huanhuan Gao, Xiaoming Xu, Liuhong Wang, Li Shen, Tiannan Guo, Shu Zheng*, Baosheng Li*, Yingkuan Shao*, Jian Wang* Cancer Letters. 2023.562: 216145.
53 Genome-wide genotype-serum proteome mapping provides insights into the cross ancestry differences in cardiometabolic disease susceptibility Fengzhe Xu#, Evan Yi-Wen Yu#, Xue Cai#, Liang Yue#, Li-peng Jing#, Xinxiu Liang#, Yuanqing Fu, Zelei Miao, Min Yang, Menglei Shuai, Wanglong Gou, Congmei Xiao, Zhangzhi Xue, Yuting Xie, Sainan Li, Sha Lu, Meiqi Shi, Xuhong Wang, Wensheng Hu, Claudia Langenberg, Jian Yang, Yu-ming Chen*, Tiannan Guo* & Ju-Sheng Zheng* Nature Communications. 2023.14: 896.
52 Proteomics Investigation of Diverse Serological Patterns in COVID-19 Xiao Liang#, Rui Sun, Jing Wang, Kai Zhou, Jun Li, Shiyong Chen, Mengge Lyu, Sainan Li, Zhangzhi Xue, Yingqiu Shi, Yuting Xie, Qiushi Zhang, Xiao Yi, Juan Pan, Donglian Wang, Jiaqin Xu, Hongguo Zhu, Guangjun Zhu, Jiansheng Zhu, Yi Zhu, Yufen Zheng*, Bo Shen*, and Tiannan Guo* Mol Cell Proteomics. 2023.22(2): 100493.
51 Longitudinal proteomic investigation of COVID-19 vaccination Yingrui Wang#, Qianru Zhu#, Rui Sun#, Xiao Yi#, Lingling Huang, Yifan Hu, Weigang Ge, Huanhuan Gao, Xinfu Ye, Yu Song, Li Shao, Yantao Li, Jie Li*, Tiannan Guo*, Junping Shi* Protein & Cell. February 6, 2023. doi.org/10.1093/procel/pwad004.
50 Comparison of fecal and blood metabolome reveals inconsistent associations of the gut microbiota with cardiometabolic diseases Kui Deng, Jin-jian Xu, Luqi Shen, Hui Zhao, Wanglong Gou, Fengzhe Xu, Yuanqing Fu, Zengliang Jiang, Menglei Shuai, Bang-yan Li, Wei Hu, Ju-Sheng Zheng & Yu-ming Chen Nat Commun. 2023 Feb 2;14(1):571. doi: 10.1038/s41467-023-36256-y.
49 DPHL v2: An updated and comprehensive DIA pan-human assay library for quantifying more than 14,000 proteins Zhangzhi Xue#, Tiansheng Zhu#, Fangfei Zhang, Cheng Zhang, Nan Xiang, Liujia Qian, Xiao Yi, Yaoting Sun, Wei Liu, Xue Cai, Linyan Wang, Xizhe Dai, Liang Yue, Lu Li, Thang V. Pham, Sander R.Piersma, Qi Xiao, Meng Luo, Cong Lu, Jiang Zhu, Yongfu Zhao, Guangzhi Wang, Junhong Xiao, Tong Liu, Zhiyu Liu, Yi He, Qijun Wu,Tingting Gong, Jianqin Zhu, Zhiguo Zheng, Juan Ye, Yan Li , Connie R.Jimenez*, Jun A*, Tiannan Guo* Patterns. 5 July 2023. doi.org/10.1016/j.patter.2023.100792.
48 Spatially resolved proteomics via tissue expansion Lu Li#, Cuiji Sun#, Yaoting Sun#, Zhen Dong#, Runxin Wu, Xiaoting Sun, Hanbin Zhang, Wenhao Jiang, Yan Zhou, Xufeng Cen, Shang Cai, Hongguang Xia, Yi Zhu, Tiannan Guo* & Kiryl D. Piatkevich* Nature Communications. 2022.13: 7242.
47 Gut microbiome, cognitive function and brain structure: a multi-omics integration analysis Xinxiu Liang, Yuanqing Fu, Wen-ting Cao, Zhihong Wang, Ke Zhang, Zengliang Jiang, Xiaofang Jia, Chun-ying Liu, Hong-rou Lin, Haili Zhong, Zelei Miao, Wanglong Gou, Menglei Shuai, Yujing Huang, Shengdi Chen, Bing Zhang, Yu-ming Chen & Ju-Sheng Zheng Transl Neurodegener. 2022 Nov 14;11(1):49. doi: 10.1186/s40035-022-00323-z.
46 Integrated proteogenomic characterization of medullary thyroid carcinoma Xiao Shi#, Yaoting Sun#, Cenkai Shen#, Yan Zhang#, Rongliang Shi#, Fan Zhang#, Tian Liao#, Guojun Lv, Zhengcai Zhu, Lianghe Jiao, Peng Li, Tiansheng Xu, Ning Qu, Naisi Huang, Jiaqian Hu, Tingting Zhang, Yanzi Gu, Guangqi Qin, Haixia Guan, Weilin Pu, Yuan Li, Xiang Geng, Yan Zhang, Tongzhen Chen, Shenglin Huang, Zhikang Zhang, Shuting Ge, Wu Wang, Weibo Xu, Pengcheng Yu, Zhongwu Lu, Yulong Wang, Liang Guo, Yu Wang*, Tiannan Guo*, Qinghai Ji* & Wenjun Wei* Cell Discovery. 2022.8(1): 120.
45 Comparative Evaluation of Proteome Discoverer and FragPipe for the TMT-Based Proteome Quantification Tianen He#, Youqi Liu#, Yan Zhou, Lu Li, He Wang, Shanjun Chen, Jinlong Gao, Wenhao Jiang, Yi Yu, Weigang Ge, Hui-Yin Chang, Ziquan Fan, Alexey I. Nesvizhskii*, Tiannan Guo*, and Yaoting Sun* Journal of Proteome Research. 2022.21(12): 3007-3015.
44 A prediction model for COVID-19 liver dysfunction in patients with normal hepatic biochemical parameters Jianfeng Bao#, Shourong Liu#, Xiao Liang#, Congcong Wang, Lili Cao, Zhaoyi Li, Furong Wei, Ai Fu, Yingqiu Shi, Bo Shen, Xiaoli Zhu, Yuge Zhao, Hong Liu, Liangbin Miao, Yi Wang, Shuang Liang, Linyan Wu, Jinsong Huang*, Tiannan Guo*, Fang Liu* Life Science Alliance. 2022.19;6(1): e202201576.
43 COVIDpro: Database for mining protein dysregulation in patients with COVID-19 Fangfei Zhang, Augustin Luna, Tingting Tan, Yingdan Chen, Chris Sander, Tiannan Guo*. Journal of Proteome Research. August 9, 2023. doi.org/10.1021/acs.jproteome.3c00092
42 Targeted protein degradation reveals RNA Pol II heterogeneity and functional diversity Yuanjun Li#, Jie Huang#, Junyi Zhu, Lijun Bao, Hui Wang, Yongpeng Jiang, Kai Tian, Rui Wang, Haonan Zheng, Wenjia Duan, Weifeng Lai, Xiao Yi, Yi Zhu, Tiannan Guo, Xiong Ji*. Molecular Cell. 2022.82(20): 3943-3959.e11.
41 Associations of dietary diversity with the gut microbiome, fecal metabolites, and host metabolism: results from 2 prospective Chinese cohorts Congmei Xiao, Jia-Ting Wang, Chang Su, Zelei Miao, Jun Tang, Yifei Ouyang, Yan Yan, Zengliang Jiang, Yuanqing Fu, Menglei Shuai, Wanglong Gou, Fengzhe Xu, Evan Y-W Yu, Yuhui Liang, Xinxiu Liang, Yunyi Tian, Jiali Wang, Feifei Huang, Bing Zhang, Huijun Wang, Yu-Ming Chen , Ju-Sheng Zheng Am J Clin Nutr. 2022 Oct 6;116(4):1049-1058. doi: 10.1093/ajcn/nqac178.
40 Representative Publication Artificial intelligence defines protein-based classification of thyroid nodules Yaoting Sun#, Sathiyamoorthy Selvarajan#, Zelin Zang#, Wei Liu#, Yi Zhu#, Hao Zhang#, Wanyuan Chen, Hao Chen, Lu Li, Xue Cai, Huanhuan Gao, Zhicheng Wu, Yongfu Zhao, Lirong Chen, Xiaodong Teng, Sangeeta Mantoo, Tony Kiat-Hon Lim, Bhuvaneswari Hariraman, Serene Yeow, Syed Muhammad Fahmy bin Syed Abdillah, Sze Sing Lee, Guan Ruan, Qiushi Zhang, Tiansheng Zhu, Yifan Hu, Zhen Dong, Weigang Ge, Qi Xiao, Weibin Wang, Guangzhi Wang, Junhong Xiao, Yi He, Zhihong Wang, Wei Sun, Yuan Qin, Jiang Zhu, Xu Zheng, Linyan Wang, Xi Zheng, Kailun Xu, Yingkuan Shao, Shu Zheng, Kexin Liu, Ruedi Aebersold, Haixia Guan, Xiaohong Wu, Dingcun Luo, Wen Tian, Stan Z. Li*, Oi Lian Kon*, N. Gopalakrishna Iyer*, Tiannan Guo*. Cell Discovery. 2022.8(1): 85.
39 Interaction of n-3 polyunsaturated fatty acids with host CD36 genetic variant for gut microbiome and blood lipids in human cohorts Zelei Miao, Geng-Dong Chen, Shaofeng Huo, Yuanqing Fu, Min-Yu Wu, Fengzhe Xu, Zengliang Jiang, Jun Tang, Wanglong Gou, Congmei Xiao, Yu-Ping Liu, Yan-Yan Wu, Ting-Yu Sun, Liang Sun, Li-Rong Shen, Xu Lin, Yu-Ming Chen, Ju-Sheng Zheng Clin Nutr. 2022 Aug;41(8):1724-1734. doi: 10.1016/j.clnu.2022.05.021.
38 Integration of protein context improves protein-based COVID-19 patient stratification Jinlong Gao#, Jiale He#, Fangfei Zhang#, Qi Xiao, Xue Cai, Xiao Yi, Siqi Zheng, Ying Zhang, Donglian Wang, Guangjun Zhu, Jing Wang, Bo Shen, Markus Ralser, Tiannan Guo*, Yi Zhu*. Clinical Proteomics. 2022.19(1): 31.
37 An in-library ligation strategy and its application in CRISPR/Cas9 screen of high-order gRNA combinations Zhike Lu#, Ke Ni#, Yingying Wang#, Yangfan Zhou, Yini Li, Jianfeng Yan, Qingkai Song, Min Liu, Yujun Xu, Zhenxing Yu, Tiannan Guo, Lijia Ma*. Nucleic Acids Research. 2022.50(11): 6575-6586.
36 High-throughput proteomic sample preparation using pressure cycling technology Xue Cai#, Zhangzhi Xue, Chunlong Wu, Rui Sun, Liujia Qian, Liang Yue, Weigang Ge, Xiao Yi, Wei Liu, Chen Chen, Huanhuan Gao, Jing Yu, Luang Xu, Yi Zhu*, Tiannan Guo*. Nature Protocols. 2022.17(10): 2307-2325.
35 Proteotypic Differences of Follicular-Patterned Thyroid Neoplasms Dongdong Huang#, Huifang Zhang, Lu Li, Weigang Ge, Wei Liu, Zhen Dong, Jinlong Gao, Nan Yao, Wenxin Fu, Lingling Huang, Tiannan Guo, Yaoting Sun* and Xiaodong Teng*. Frontiers in Endocrinology. 2022.13: 854611.
34 Gut microbiota signatures of long-term and short-term plant-based dietary pattern and cardiometabolic health: a prospective cohort study Zelei Miao, Wenwen Du, Congmei Xiao, Chang Su, Wanglong Gou, Luqi Shen, Jiguo Zhang, Yuanqing Fu, Zengliang Jiang, Zhihong Wang, Xiaofang Jia, Ju-Sheng Zheng & Huijun Wang BMC Med. 2022 Jun 15;20(1):204. doi: 10.1186/s12916-022-02402-4.
33 Optimization of Microflow LC Coupled with Scanning SWATH and Its Application in Hepatocellular Carcinoma Tissues Huanhuan Gao#, Youqi Liu, Vadim Demichev, Stephen Tate, Chen Chen, Jiang Zhu, Cong Lu, Markus Ralser, Tiannan Guo*, and Yi Zhu*. Journal of Proteome Research. 2022.21(7): 1686-1693.
32 Molecular Subgroups of Intrahepatic Cholangiocarcinoma Discovered by Single-Cell RNA Sequencing–Assisted Multiomics Analysis Xuanwen Bao#, Qiong Li#, Jinzhang Chen#, Diyu Chen#, Chanqi Ye#, Xiaomeng Dai, Yanfang Wang, Xin Li, Xiaoxiang Rong, Fei Cheng, Ming Jiang, Zheng Zhu, Yongfeng Ding, Rui Sun, Chuan Liu, Lingling Huang, Yuzhi Jin, Bin Li, Juan Lu, Wei Wu, Yixuan Guo, Wenguang Fu, Sarah Raye Langley, Vincent Tano, Weijia Fang, Tiannan Guo*, Jianpeng Sheng*, Peng Zhao*, and Jian Ruan*. Cancer Immunology Research. 2022.10(7): 811-828.
31 Temporal relationship among adiposity, gut microbiota, and insulin resistance in a longitudinal human cohort Kui Deng, Menglei Shuai, Zheqing Zhang, Zengliang Jiang, Yuanqing Fu, Luqi Shen, Ju-Sheng Zheng*, Yu-ming Chen* BMC Med. 19 May 2022. doi.org/10.1186/s12916-022-02376-3
30 Proteomic characterization of Omicron SARS-CoV-2 host response Jianfeng Bao#, Rui Sun#, Jingwen Ai#, Liujia Qian#, Fang Liu#, Hongyu Wang#, Lingling Tan, Xue Cai, Yingqiu Shi, Xiao Liang, Weigang Ge, Jing Wu, Chen Chen, Wenhong Zhang*, Jinsong Huang* & Tiannan Guo* Cell Discovery. 18 May 2022. doi.org/10.1038/s41421-022-00418-x
29 Association Between Postterm Pregnancy and Adverse Growth Outcomes in Preschool-Aged Children Jun Tang, Wanglong Gou, Yuanqing Fu, Kelei Li, Xiaofei Guo, Tao Huang, Huijuan Liu*, Duo Li*, Ju-Sheng Zheng* The American Journal of Clinical Nutrition. 11 May 2022. doi.org/10.1093/ajcn/nqac127
28 Association of gut microbiota with glycaemic traits and incident type 2 diabetes, and modulation by habitual diet: a population-based longitudinal cohort study in Chinese adults Huijun Wang#, Wanglong Gou#, Chang Su, Wenwen Du, Jiguo Zhang, Zelei Miao, Congmei Xiao, Zengliang Jiang, Zhihong Wang, Yuanqing Fu, Xiaofang Jia, Yifei Ouyang, Hongru Jiang, Feifei Huang, Li Li, Bing Zhang*, Ju-Sheng Zheng* Diabetologia. 31 March 2022. doi.org/10.1007/s00125-022-05687-5
27 Multi-omics in COVID-19: Seeing the unseen but overlooked in the clinic Tian Lu, Yingrui Wang, Tiannan Guo* Cell Reports Medicine. March 15 2022. doi.org/10.1016/j.xcrm.2022.100580
26 Stratification of follicular thyroid tumours using data-independent acquisition proteomics and a comprehensive thyroid tissue spectral library Yaoting Sun*, Lu Li, Yan Zhou, Weigang Ge, He Wang, Runxin Wu, Wei Liu, Hao Chen, Qi Xiao, Xue Cai, Zhen Dong, Fangfei Zhang, Junhong Xiao, Guangzhi Wang, Yi He, Jinlong Gao, Oi Lian Kon, Narayanan Gopalakrishna Iyer, Haixia Guan, Xiaodong Teng, Yi Zhu*, Yongfu Zhao*, Tiannan Guo* Molecular Oncology. 23 February 2022. doi.org/10.1002/1878-0261.13198
25 Circulating proteome and progression of type 2 diabetes Wanglong Gou, MSc#, Liang Yue, BSc#, Xin-yi Tang, MPH, Yan-yan Wu, MPH, Xue Cai, MSc, Menglei Shuai, BSc, Zelei Miao, MPH, Yuanqing Fu, PhD, Hao Chen, BSc, Zengliang Jiang, PhD, Jiali Wang, MPH, Yunyi Tian, MPH, Congmei Xiao, MSc, Nan Xiang, BSc, Zhen Wu, PhD, Yu-ming Chen, PhD*, Tiannan Guo, PhD*, Ju-Sheng Zheng, PhD* The Journal of Clinical Endocrinology. 20 February 2022. doi.org/10.1210/clinem/dgac098
24 Human Gut Antibiotic Resistome and Progression of Diabetes Menglei Shuai#, Guoqing Zhang#, Fang-fang Zeng#, Yuanqing Fu#, Xinxiu Liang, Ling Yuan, Fengzhe Xu, Wanglong Gou, Zelei Miao, Zengliang Jiang, Jia-ting Wang, Lai-bao Zhuo, Yu-ming Chen*, Feng Ju*, Ju-Sheng Zheng* Advanced Science. 10 February 2022. doi.org/10.1002/advs.202104965
23 sRAGE alleviates SARS-CoV-2-induced pneumonia in hamster Xiuqin Zhang#, Dan Li#, Rui Sun#, Xinli Hu#, Zhiqi Song#, Xiaotian Ni, Hua Zhu, Tiannan Guo*, Chuan Qin*& Rui-Ping Xiao* Sig Transduct Target Ther. 02 February 2022. doi.org/10.1038/s41392-022-00883-6
22 Mapping the human gut mycobiome in middle-aged and elderly adults: multiomics insights and implications for host metabolic health Menglei Shuai#, Yuanqing Fu#, Hai-li Zhong#, Wanglong Gou, Zengliang Jiang, Yuhui Liang, Zelei Miao, Jin-Jian Xu, Tien Huynh, Mark L Wahlqvist*, Yu-ming Chen*, Ju-Sheng Zheng* Gut Published Online First. 11 January 2022. doi: 10.1136/gutjnl-2021-326298
21 Proteomic and metabolomic profiling of urine uncovers immune responses in patients with COVID-19 Xiaojie Bi#, Wei Liu#, Xuan Ding#, Shuang Liang#, Yufen Zheng#, Xiaoli Zhu#, Sheng Quan#, Xiao Yi, Nan Xiang, Juping Du, Haiyan Lyu, Die Yu, Chao Zhang, Luang Xu, Weigang Ge, Xinke Zhan, Jiale He, Zi Xiong, Shun Zhang, Yanchang Li, Ping Xu, Guangjun Zhu, Donglian Wang, Hongguo Zhu, Shiyong Chen, Jun Li, Haihong Zhao, Yi Zhu*, Huafen Liu*, Jiaqin Xu*, Bo Shen*, Tiannan Guo* Cell Reports. 27 December 2021. doi.org/10.1016/j.celrep.2021.110271
20 Proteomics profiling of colorectal cancer progression identifies PLOD2 as a potential therapeutic target Yingkuan Shao#, Kailun Xu#, Xi Zheng, Biting Zhou, Xiuli Zhang, Lin Wang, Yaoting Sun, Dan Li, Ting Chen, Jian Wang, Shaojun Yu, Lifeng Sun, Xiaoming Xu, Shaozhi Dai, Huanhuan Gao, Guan Ruan, Wei Liu, Xue Cai, Tiansheng Zhu, Lina Qi, Jiani Chen, Wangxiong Hu, Xingyue Weng, Yi Zhu, Xueping Xiang, Zhiyuan Hu, Jinfan Li, Lirong Chen, Jimin Shao*, Shu Zheng*, Tiannan Guo* Cancer Communications. 04 December 2021. doi.org/10.1002/cac2.12240
19 A prostate cancer tissue specific spectral library for targeted proteomic analysis Rui Sun, Mengge Lyu, Shuang Liang, Weigang Ge, Yingrui Wang, Xuan Ding, Cheng Zhang, Yan Zhou, Shanjun Chen, Lirong Chen, Tiannan Guo* Proteomics. 20 November 2021. doi.org/10.1002/pmic.202100147
18 Potential Use of Serum Proteomics for Monitoring COVID-19 Progression to Complement RT-PCR Detection Ying Zhang#, Xue Cai#, Weigang Ge#, Donglian Wang#, Guangjun Zhu#, Liujia Qian#, Nan Xiang, Liang Yue, Shuang Liang, Fangfei Zhang, Jing Wang, Kai Zhou, Yufen Zheng, Minjie Lin, Tong Sun, Ruyue Lu, Chao Zhang, Luang Xu, Yaoting Sun, Xiaoxu Zhou, Jing Yu, Mengge Lyu, Bo Shen, Hongguo Zhu*, Jiaqin Xu*, Yi Zhu*, and Tiannan Guo* J. Proteome Res. 16 November 2021. doi.org/10.1021/acs.jproteome.1c00525
17 Computational Optimization of Spectral Library Size Improves DIA-MS Proteome Coverage and Applications to 15 Tumors Weigang Ge#, Xiao Liang#, Fangfei Zhang#, Yifan Hu#, Luang Xu, Nan Xiang, Rui Sun, Wei Liu, Zhangzhi Xue, Xiao Yi, Yaoting Sun, Bo Wang, Jiang Zhu, Cong Lu, Xiaolu Zhan, Lirong Chen, Yan Wu, Zhiguo Zheng, Wangang Gong, Qijun Wu, Jiekai Yu, Zhaoming Ye, Xiaodong Teng, Shiang Huang, Shu Zheng, Tong Liu*, Chunhui Yuan*, Tiannan Guo* J. Proteome Res. 8 November 2021. doi.org/10.1021/acs.jproteome.1c00640
16 Novel deep learning radiomics model for preoperative evaluation of hepatocellular carcinoma differentiation based on computed tomography data Yong Ding#, Shijian Ruan#, Yubizhuo Wang#, Jiayuan Shao#, Rui Sun, Wuwei Tian, Nan Xiang, Weigang Ge, Xiuming Zhang, Kunkai Su, Jingwen Xia, Qiang Huang, Weihai Liu, Qinxue Sun, Haibo Dong*, Mylène C. Q. Farias, Tiannan Guo*, Andrey S. Krylov, Wenjie Liang*, Wenbo Xiao, Xueli Bai, Tingbo Liang* Clin. Transl. Med. 06 November 2021. doi.org/10.1002/ctm2.570
15 SnapShot: Clinical proteomics Yi Zhu, Ruedi Aebersold, Matthias Mann, Tiannan Guo Cell. 2 September 2021. doi:10.1016/j.cell.2021.08.015
14 Precision nutrition for gut microbiome and diabetes research: Application of nutritional n-of-1 clinical trials Ju-Sheng Zheng*, José M Ordovás J Diabetes. 2021 Dec;13(12):1059-1061. doi: 10.1111/1753-0407.13220. Epub 2021 Aug 28
13 Circulating vitamin C concentration and risk of cancers: a Mendelian randomization study Yuanqing Fu#, Fengzhe Xu#, Longda Jiang, Zelei Miao, Xinxiu Liang, Jian Yang, Susanna C Larsson, Ju-Sheng Zheng* BMC Med. 2021 Jul 30;19(1):171. doi: 10.1186/s12916-021-02041-1
12 Individual Postprandial Glycemic Responses to Diet in n-of-1 Trials: Westlake N-of-1 Trials for Macronutrient Intake (WE-MACNUTR) Yue Ma#, Yuanqing Fu#, Yunyi Tian#, Wanglong Gou, Zelei Miao, Min Yang, José M Ordovás, and Ju-Sheng Zheng* The Journal of Nutrition, 01 Oct 2021, 151(10):3158-3167. DOI: 10.1093/jn/nxab227
11 High-Throughput Proteomics and AI for Cancer Biomarker Discovery Qi Xiao, Fangfei Zhang, Luang Xu, Liang Yue, Oi Lian Kon, Yi Zhu*,Tiannan Guo* Advanced Drug Delivery Reviews. 25 June,2021,10.1016/j.addr.2021.113844
10 Eleven routine clinical features predict COVID-19 severity uncovered by machine learning of longitudinal measurements Kai Zhou#, Yaoting Sun#, Lu Li#, Zelin Zang#, Jing Wang#, Jun Li#, Junbo Liang#, Fangfei Zhang, Qiushi Zhang, Weigang Ge, Hao Chen, Xindong Sun, Liang Yue, Xiaomai Wu, Bo Shen, Jiaqin Xu, Hongguo Zhu, Shiyong Chen, Hai Yang, Shigao Huang, Minfei Peng, Dongqing Lv, Chao Zhang, Haihong Zhao, Luxiao Hong, Zhehan Zhou, Haixiao Chen, Xuejun Dong, Chunyu Tu, Minghui Li, Yi Zhu*, Baofu Chen*, Stan Z. Li*, Tiannan Guo* Computational and Structural Biotechnology Journal. 2021. 19: 3640-3649. doi: 10.1016/2021.06.22.
09 Proteomic and metabolomic investigation of serum lactate dehydrogenase elevation in COVID-19 patients Haixi Yan#, Xiao Liang#, Juping Du#, Zebao He#, Yu Wang, Mengge Lyu ,Liang Yue, Fangfei Zhang, Zhangzhi Xue, Luang Xu, Guan Ruan, Jun Li, Hongguo Zhu, Jiaqin Xu, Shiyong Chen, Chao Zhang, Dongqing Lv ,Zongmei Lin, Bo Shen, Yi Zhu*, Biyun Qian*, Haixiao Chen*, Tiannan Guo* Proteomics. 13 May 2021. doi.org/10.1002/pmic.202100002
08 Gut microbiota, inflammation, and molecular signatures of host response to infection Wanglong Gou#, Yuanqing Fu#, Liang Yue#, Geng-Dong Chen#, Xue Cai#, Menglei Shuai#, Fengzhe Xu#, Xiao Yi, Hao Chen, Yi Zhu, Mian-Li Xiao, Zengliang Jiang, Zelei Miao, Congmei Xiao, Bo Shen, Xiaomai Wu, Haihong Zhao, Wenhua Ling, Jun Wang*, Yu-Ming Chen*, Tiannan Guo*, Ju-Sheng Zheng* J Genet Genomics. 2021 Sep 20;48(9):792-802. doi:10.1016/j.jgg.2021.04.002. Epub 2021 May 3
07 Immunometabolism the CyTOF way Liujia Qian, Tiannan Guo* Immunity. Preview. 13 April 2021 10.1016/j.immuni.2021.03.019
06 DIA-based Proteomics Identifies IDH2 as a Targetable Regulator of Acquired Drug Resistance in Chronic Myeloid Leukemia Wei Liu#, Yaoting Sun, Weigang Ge, Fangfei Zhang, Lin Gan, Yi Zhu, Tiannan Guo*, Kexin Liu* Mol Cell Preteomics. DOI:https://doi.org/10.1016/j.mcpro.2021.100187
05 Interpretable Machine Learning Framework Reveals Robust Gut Microbiome Features Associated With Type 2 Diabetes Wanglong Gou#, Chu-Wen Ling#, Yan He#, Zengliang Jiang#, Yuanqing Fu, Fengzhe Xu, Zelei Miao, Ting-Yu Sun, Jie-Sheng Lin, Hui-Lian Zhu, Hongwei Zhou*, Yu-Ming Chen*, Ju-Sheng Zheng* Diabetes Care. 2021 Feb;44(2):358-366. doi: 10.2337/dc20-1536. Epub 2020 Dec 7
04 Multi-organ Proteomic Landscape of COVID-19 Autopsies. Xiu Nie#, Liujia Qian#, Rui Sun#, Bo Huang#, Xiaochuan Dong#, Qi Xiao#, Qiushi Zhang#, Tian Lu, Liang Yue, Shuo Chen, Xiang Li, Yaoting Sun, Li Lu, Luang Xu, Li Yan, Ming Yang, Zhangzhi Xue, Shuang Liang, Xuan Ding, Chunhui Yuan, Li Peng, Wei Liu, Xiao Yi, Mengge Lyu, Guixiang Xiao, Xia Xu, Weigang Ge, Jiale He, Jun Fan, Junhua Wu, Meng Luo, Xiaona Chang, Huaxiong Pan, Xue Cai, Junjie Zhou, Jing Yu, Huanhuan Gao, Mingxing Xie, Sihua Wang, Guan Ruan, Hao Chen, Hua Su, Heng Mei, Danju Luo, Dashi Zhao, Fei Xu, Yan Li, Yi Zhu*, Jiahong Xia*, Yu Hu*, Tiannan Guo* Cell. 2021. 184(3): 775-791. doi: 10.1016/j.cell.2021.01.004
03 ProteomeExpert: a Docker image-based web server for exploring, modeling, visualizing and mining quantitative proteomic datasets Tiansheng Zhu, Hao Chen, Xishan Yan, Zhicheng Wu, Xiaoxu Zhou, Qi Xiao, Weigang Ge, Qiushi Zhang, Chao Xu, Luang Xu, Guan Ruan, Zhangzhi Xue, Chunhui Yuan*, Guo-Bo Chen* and Tiannan Guo* Bioinformatics. January 08, 2021 doi.org/10.1093/bioinformatics/btaa1088
02 Interpretable Machine Learning Framework Reveals Robust Gut Microbiome Features Associated With Type 2 Diabetes Wanglong Gou#, Chu-Wen Ling#, Yan He#, Zengliang Jiang#, Yuanqing Fu, Fengzhe Xu, Zelei Miao, Ting-Yu Sun, Jie-Sheng Lin, Hui-Lian Zhu, Hongwei Zhou*, Yu-Ming Chen*, Ju-Sheng Zheng* Diabetes Care. 2021 Feb;44(2):358-366. doi: 10.2337/dc20-1536. Epub 2020 Dec 7
01 Dietary fruit and vegetable intake, gut microbiota, and type 2 diabetes: results from two large human cohort studies Zengliang Jiang#, Ting-yu Sun#, Yan He#, Wanglong Gou, Luo-shi-yuan Zuo, Yuanqing Fu, Zelei Miao, Menglei Shuai, Fengzhe Xu, Congmei Xiao, Yuhui Liang, Jiali Wang, Yisong Xu, Li-peng Jing, Wenhua Ling, Hongwei Zhou*, Yu-ming Chen* & Ju-Sheng Zheng* BMC Med. 2020 Dec 3;18(1):371. doi: 10.1186/s12916-020-01842-0
